PePr: Peak Prioritization Pipeline

PePr: Peak Prioritization Pipeline Logo

PePr is an analysis pipeline for ChIP-Seq experiments with biological replicates, written and available as python scripts. The program accounts for the variation among biological replicates and (optionally) peak locations relative to gene structure information using a mixture model. It can be used either to determine histone modifications or transcription factor binding versus control data, or for two group comparisons.